ProjectBuild a Permission-Aware Knowledge Hub as an MCP Server: the explanation · Module 8: Indexing and embeddings · part 10 of 22
Part 10 · Module 8: Indexing and embeddings

Module 8: Indexing and embeddings

25 min read·
About 50 minutes · Needs: Module 5 (the chunks table), Module 6 (the seed company) · Code: server/wayfinder/index/loader.py, server/wayfinder/index/chunker.py, server/wayfinder/index/embedder.py, server/wayfinder/index/indexer.py, server/wayfinder/cli.py

Where this fits

WHERE THIS FITS Wayfinder this module AI CLIENTS the model writes the answer CONSOLE React, nginx WAYFINDER SERVER Starlette, mcp 2.3 RETRIEVAL permission filter before ranking INDEXING fastembed DATA Postgres 17 OPERATIONS evals, Docker, Cloud Run Claude Code HTTP + OAuth Cursor HTTP + OAuth Claude Desktop stdio bridge or connector MCP Inspector debugging, quick OAuth Web console React: search, audit, connect nginx one URL: /mcp, OAuth, /api MCP layer tools, resources Elicitation confirm create_issue OAuth 2.1 auth server, PKCE Tokens, sessions wf_pat_, cookie Console API /api REST Audit log every call, redacted stdio bridge wayfinder-stdio Guards proxy secret, limits Access rules groups per team Hybrid search pgvector + full text Fusion, boosts RRF, freshness, ADRs Knowledge decisions, owners Indexer loader, chunker bge-small-en fastembed, CPU PostgreSQL pgvector, full text Seed company Tidewater Freight Evaluation retrieval, 0 leaks Containers Docker Compose Deploy Cloud Run, Cloud SQL CI/CD GitHub Actions, WIF
This module (blue) is the indexing path: the seed is cut into chunks, the embedding model (amber) turns each chunk into 384 numbers, and both land in PostgreSQL.

Search can only find what was indexed, and only as well as it was cut. This module follows Tidewater Freight's 403 sources from files on disk to 1,154 rows in the chunks table, each with a vector of 384 numbers and a keyword index. It explains what an embedding is, why Wayfinder uses a small model on CPU, how sources are cut into chunks, and how a reindex re-embeds only what changed.

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